BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013A10SP1|AL426457
(666 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1378 778 0.0
>3x_Contig1378
Length = 8604
Score = 778 bits (374), Expect = 0.0
Identities = 507/575 (88%), Gaps = 6/575 (1%)
Strand = Plus / Minus
Query: 1 aaaaagacamattgtgcccagcccgcgtatgggc-cccatagatcctggagcttccttct 59
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 577 aaaaggacacattgtgcccagcccgcgtatgggcgcccatagatcctggagcttccttct 518
Query: 60 gtacatatcaagttcatagtwmacctwcttacgtgtaawmrgtaactttttgtattcagc 119
|||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||
Sbjct: 517 gtacatatcaagttcatagttcaccttcttacgtgtaatcggtaactttttgtattcagc 458
Query: 120 ctgcagttcactgatattacctagcttagtgwtrtawaatwtgtagtccctcgawgcaaw 179
||||||||||||||| | ||| |||||||| | | ||| ||||||||||||| ||||
Sbjct: 457 ctgcagttcactgattt--cct-gcttagtgttgtttaatttgtagtccctcgatgcaat 401
Query: 180 ccttgmgatgtraacaacgaaaggaactacctcgtcaaatcmcaaccctcccatgagaag 239
||||| ||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 400 ccttgcgatgtgtacatcgacaggaactacctcgtcaaatcccaaccctcccatgagaag 341
Query: 240 camacaatcagctactttcggacccacacctggatacgcmawcaacttctctttgacatc 299
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 340 cacacaatcagctactttcggacccacacctggatacgccatcaacttctctttgacatc 281
Query: 300 ttgatacmmcattttacmcwwaatgcgccaamtgagcatatactctgaatcagacatatc 359
||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct: 280 ttgataccccattttacccttaatgcgccaactgagcatatactctgaatcagacatatc 221
Query: 360 gccttwwtccatagacatcagttgagcagaaccaatgataaataargccmaaaaacmaaa 419
||||| |||||||||||||||||||||| ||||||||| || ||| | ||| |||
Sbjct: 220 gcctttttccatagacatcagttgagcagttccaatgatatatttggccctataaccaaa 161
Query: 420 gccaaratmtcttagtttttcttcagatgctcwwtctacrawctratccgaactwgggaa 479
||||| || ||||||||||||||||||||||| ||||| | || ||||||||| |||||
Sbjct: 160 gccaagatctcttagtttttcttcagatgctctttctacgatctgatccgaacttgggaa 101
Query: 480 cgaatactgcwwagmaccatcaaactctgcaattwmatcaccaaattcagwggmcaagga 539
|||||||||| || ||||||||||||||||||| |||||||||||||| | ||||||
Sbjct: 100 cgaatactgcttagcaccatcaaactctgcaatttcatcaccaaattcagt-gccaagga 42
Query: 540 atggcacattaaagtgattcttgatatattattat 574
|| ||||||| |||||||||||| |||||||||
Sbjct: 41 at-gcacattttagtgattcttgaggtattattat 8
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.44 0.721 1.36
Gapped
Lambda K H
1.44 0.721 1.36
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3034
Number of Sequences: 1807
Number of extensions: 3034
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 666
length of database: 10,358,551
effective HSP length: 16
effective length of query: 650
effective length of database: 10,329,639
effective search space: 6714265350
effective search space used: 6714265350
T: 0
A: 40
X1: 5 (10.4 bits)
X2: 14 (29.1 bits)
S1: 11 (23.3 bits)
S2: 48 (100.3 bits)